PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10028214
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 65aa    MW: 7104.27 Da    PI: 11.3251
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10028214genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-291059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsstgkly++ss
  Lus10028214 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFSS 59
                 8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-29261IPR002100Transcription factor, MADS-box
CDDcd002658.16E-37260No hitNo description
PRINTSPR004043.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TGKLYDFSSS  60
RSPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_D6e-18260159Myocyte-specific enhancer factor 2A
3mu6_C6e-18260159Myocyte-specific enhancer factor 2A
3mu6_B6e-18260159Myocyte-specific enhancer factor 2A
3mu6_A6e-18260159Myocyte-specific enhancer factor 2A
1egw_D6e-18260159MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C6e-18260159MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B6e-18260159MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A6e-18260159MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1tqe_S8e-18160160Myocyte-specific enhancer factor 2B
1tqe_R8e-18160160Myocyte-specific enhancer factor 2B
1tqe_Q8e-18160160Myocyte-specific enhancer factor 2B
1tqe_P8e-18160160Myocyte-specific enhancer factor 2B
3p57_J9e-18260159Myocyte-specific enhancer factor 2A
3p57_I9e-18260159Myocyte-specific enhancer factor 2A
3p57_D9e-18260159Myocyte-specific enhancer factor 2A
3p57_C9e-18260159Myocyte-specific enhancer factor 2A
3p57_B9e-18260159Myocyte-specific enhancer factor 2A
3p57_A9e-18260159Myocyte-specific enhancer factor 2A
3kov_J9e-18260159Myocyte-specific enhancer factor 2A
3kov_I9e-18260159Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018298.17e-35AGAMOUS-like 16
RefseqXP_010104581.11e-35MADS-box transcription factor 27
SwissprotQ9SI381e-34ANR1_ARATH; MADS-box transcription factor ANR1
TrEMBLA0A068TXG03e-37A0A068TXG0_COFCA; Uncharacterized protein
STRINGVIT_03s0097g00160.t012e-33(Vitis vinifera)
STRINGSi019880m2e-33(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.18e-36AGAMOUS-like 44